Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine--trna ligase | HMPREF1862_01501 | Not Available | Negative | 1600948 - 1602957 | 74866.2 |
| putative glutamyl-queuosine trna(asp) synthetase | HMPREF1862_01502 | Not Available | Positive | 1603009 - 1603971 | 35621.8 |
| pyruvate formate-lyase 1-activating enzyme | HMPREF1862_01503 | Not Available | Negative | 1603984 - 1604895 | 33519.1 |
| autonomous glycyl radical cofactor domain protein | HMPREF1862_01504 | Not Available | Negative | 1605010 - 1605261 | 9524.44 |
| formate c-acetyltransferase | HMPREF1862_01505 | Not Available | Negative | 1605372 - 1607468 | 77816.8 |
| pp_01474 | HMPREF1862_01506 | Not Available | Negative | 1607608 - 1608861 | Not Available |
| putative membrane protein | HMPREF1862_01507 | Not Available | Negative | 1608833 - 1609573 | 27035.5 |
| dephospho-coa kinase | HMPREF1862_01508 | Not Available | Negative | 1609658 - 1610320 | 24010.3 |
| hypothetical protein | HMPREF1862_01509 | Not Available | Negative | 1610439 - 1611998 | 57009.8 |
| hypothetical protein | HMPREF1862_01510 | Not Available | Negative | 1612070 - 1612519 | 15417.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
