Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| holliday junction dna helicase ruvb | HMPREF1862_01491 | Not Available | Negative | 1592393 - 1593517 | 40073.8 |
| holliday junction dna helicase ruva | HMPREF1862_01492 | Not Available | Negative | 1593527 - 1594126 | 20918.1 |
| crossover junction endodeoxyribonuclease ruvc | HMPREF1862_01493 | Not Available | Negative | 1594166 - 1594804 | 23088.0 |
| dna-binding regulatory protein, yebc/pmpr family | HMPREF1862_01494 | Not Available | Negative | 1594814 - 1595578 | 27087.5 |
| hydrolase, nudix family | HMPREF1862_01495 | Not Available | Negative | 1595668 - 1596237 | 21590.5 |
| hypothetical protein | HMPREF1862_01496 | Not Available | Negative | 1596257 - 1597348 | 39371.9 |
| putative gdp-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase | HMPREF1862_01497 | Not Available | Negative | 1597706 - 1598815 | 39792.3 |
| lipid a biosynthesis (kdo)2-(lauroyl)-lipid iva acyltransferase | HMPREF1862_01498 | Not Available | Negative | 1598812 - 1599762 | 34791.4 |
| cdp-alcohol phosphatidyltransferase | HMPREF1862_01499 | Not Available | Negative | 1599763 - 1600377 | 21101.3 |
| histidine triad domain protein | HMPREF1862_01500 | Not Available | Negative | 1600381 - 1600944 | 20721.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
