Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate--trna ligase | HMPREF1862_01481 | Not Available | Negative | 1577750 - 1579552 | 66764.0 |
| putative cold-shock dead-box protein a | HMPREF1862_01482 | Not Available | Positive | 1579673 - 1581577 | 68692.1 |
| utp--glucose-1-phosphate uridylyltransferase | HMPREF1862_01483 | Not Available | Negative | 1581692 - 1583071 | 49911.6 |
| hypothetical protein | HMPREF1862_01484 | Not Available | Negative | 1583102 - 1584442 | 51124.2 |
| metallo-beta-lactamase domain protein | HMPREF1862_01485 | Not Available | Positive | 1584574 - 1585329 | 27331.3 |
| gtp diphosphokinase | HMPREF1862_01486 | Not Available | Negative | 1585956 - 1588283 | 86372.8 |
| putative adenine phosphoribosyltransferase | HMPREF1862_01487 | Not Available | Negative | 1588368 - 1588907 | 19122.5 |
| export membrane protein secf | HMPREF1862_01488 | Not Available | Negative | 1588904 - 1589992 | 39121.0 |
| export membrane protein secd | HMPREF1862_01489 | Not Available | Negative | 1589989 - 1591872 | 66865.7 |
| putative preprotein translocase, yajc subunit | HMPREF1862_01490 | Not Available | Negative | 1591915 - 1592346 | 15150.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
