Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00130 | Not Available | Positive | 122091 - 122291 | 7059.21 |
| hypothetical protein | HMPREF1862_00131 | Not Available | Positive | 122331 - 122768 | 15668.0 |
| hypothetical protein | HMPREF1862_00132 | Not Available | Negative | 123114 - 123959 | 30734.3 |
| hypothetical protein | HMPREF1862_00133 | Not Available | Negative | 124124 - 124252 | 4870.23 |
| gmp synthase domain protein | HMPREF1862_00134 | Not Available | Negative | 124482 - 126074 | 58122.4 |
| phosphate acetyltransferase | HMPREF1862_00135 | Not Available | Positive | 126230 - 127744 | 52553.9 |
| acetate kinase | HMPREF1862_00136 | Not Available | Positive | 127827 - 128957 | 41826.3 |
| ribose 5-phosphate isomerase | HMPREF1862_00137 | Not Available | Negative | 129094 - 129543 | 16385.4 |
| glycerophosphodiester phosphodiesterase family protein | HMPREF1862_00138 | Not Available | Negative | 129571 - 130296 | 26332.3 |
| peptidase, m23 family | HMPREF1862_00139 | Not Available | Negative | 130287 - 131012 | 25346.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
