Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01471 | Not Available | Negative | 1565383 - 1566375 | 36919.6 |
| protein folc | HMPREF1862_01472 | Not Available | Negative | 1566462 - 1568264 | 63791.5 |
| carbohydrate kinase, fggy family protein | HMPREF1862_01473 | Not Available | Positive | 1568381 - 1569964 | 57780.8 |
| nad-dependent glycerol-3-phosphate dehydrogenase | HMPREF1862_01474 | Not Available | Positive | 1569980 - 1571026 | 36653.2 |
| transcriptional regulator, deor family | HMPREF1862_01475 | Not Available | Positive | 1571019 - 1571798 | 28362.1 |
| isoleucine--trna ligase | HMPREF1862_01476 | Not Available | Negative | 1571874 - 1575152 | 123628.0 |
| hypothetical protein | HMPREF1862_01477 | Not Available | Negative | 1575258 - 1575401 | 5155.41 |
| pyrroline-5-carboxylate reductase | HMPREF1862_01478 | Not Available | Positive | 1575426 - 1576241 | 27912.8 |
| hypothetical protein | HMPREF1862_01479 | Not Available | Positive | 1576338 - 1576664 | 11959.4 |
| transporter, bile acid/na+ symporter family protein | HMPREF1862_01480 | Not Available | Positive | 1576697 - 1577665 | 34532.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
