Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ketose-bisphosphate aldolase | HMPREF1862_01451 | Not Available | Negative | 1544203 - 1545015 | 29156.5 |
| carbohydrate kinase, fggy family protein | HMPREF1862_01452 | Not Available | Negative | 1545130 - 1546650 | 55197.4 |
| deoxyribose-phosphate aldolase | HMPREF1862_01453 | Not Available | Negative | 1546653 - 1547348 | 25479.7 |
| ubic transcription regulator-associated domain protein | HMPREF1862_01454 | Not Available | Negative | 1547453 - 1548202 | 27983.8 |
| hypothetical protein | HMPREF1862_01455 | Not Available | Negative | 1548367 - 1549692 | 50004.5 |
| hypothetical protein | HMPREF1862_01456 | Not Available | Negative | 1550027 - 1550260 | 8918.34 |
| addiction module antitoxin, relb/dinj family | HMPREF1862_01457 | Not Available | Positive | 1550602 - 1550877 | 10334.4 |
| hypothetical protein | HMPREF1862_01458 | Not Available | Negative | 1550929 - 1551096 | 5951.57 |
| hypothetical protein | HMPREF1862_01459 | Not Available | Negative | 1551183 - 1551377 | 7148.53 |
| recf/recn/smc protein | HMPREF1862_01460 | Not Available | Positive | 1551958 - 1554558 | 98435.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
