Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01441 | Not Available | Positive | 1532995 - 1533438 | 16337.3 |
| hypothetical protein | HMPREF1862_01442 | Not Available | Positive | 1533529 - 1533660 | 4909.79 |
| pin domain protein | HMPREF1862_01443 | Not Available | Negative | 1533642 - 1534136 | 18762.3 |
| hypothetical protein | HMPREF1862_01444 | Not Available | Negative | 1534137 - 1535300 | 43083.1 |
| helicase protein | HMPREF1862_01445 | Not Available | Positive | 1535759 - 1540858 | 192032.0 |
| hypothetical protein | HMPREF1862_01446 | Not Available | Positive | 1540946 - 1541986 | 38986.7 |
| hypothetical protein | HMPREF1862_01447 | Not Available | Negative | 1542001 - 1542144 | 5376.37 |
| hypothetical protein | HMPREF1862_01448 | Not Available | Positive | 1542230 - 1542694 | 18299.6 |
| giy-yig catalytic domain protein | HMPREF1862_01449 | Not Available | Positive | 1542761 - 1543120 | 13904.2 |
| had hydrolase, family ia, variant 3 | HMPREF1862_01450 | Not Available | Negative | 1543426 - 1544202 | 28303.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
