Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxoglutarate dehydrogenase inhibitor | HMPREF1862_01431 | Not Available | Negative | 1519347 - 1519775 | 15387.2 |
| formyltetrahydrofolate deformylase | HMPREF1862_01432 | Not Available | Positive | 1519934 - 1520788 | 32056.8 |
| formamidopyrimidine-dna glycosylase h2th domain protein | HMPREF1862_01433 | Not Available | Negative | 1520848 - 1521708 | 31797.1 |
| peptidase family m13 | HMPREF1862_01434 | Not Available | Positive | 1521771 - 1523750 | 74413.7 |
| membrane alanyl aminopeptidase | HMPREF1862_01435 | Not Available | Positive | 1523800 - 1526358 | 94966.0 |
| dna polymerase iii, alpha subunit | HMPREF1862_01436 | Not Available | Negative | 1526435 - 1529506 | 112841.0 |
| hypothetical protein | HMPREF1862_01437 | Not Available | Negative | 1529503 - 1531077 | 57023.1 |
| hypothetical protein | HMPREF1862_01438 | Not Available | Negative | 1531178 - 1531663 | 16827.7 |
| addiction module antitoxin, relb/dinj family | HMPREF1862_01439 | Not Available | Negative | 1531843 - 1532184 | 12768.4 |
| lyttr dna-binding domain protein | HMPREF1862_01440 | Not Available | Positive | 1532480 - 1532953 | 17272.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
