Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01411 | Not Available | Negative | 1496363 - 1496725 | 13822.2 |
| l-ribulose-5-phosphate 4-epimerase | HMPREF1862_01412 | Not Available | Negative | 1496842 - 1497552 | 25202.0 |
| ribulokinase | HMPREF1862_01413 | Not Available | Negative | 1497563 - 1499227 | 59468.8 |
| 3-dehydroquinate synthase | HMPREF1862_01414 | Not Available | Negative | 1499289 - 1500650 | 49145.6 |
| putative ribulokinase | HMPREF1862_01415 | Not Available | Negative | 1500678 - 1502282 | 58897.0 |
| had hydrolase, family iia | HMPREF1862_01416 | Not Available | Negative | 1502365 - 1503225 | 32289.7 |
| hypothetical protein | HMPREF1862_01417 | Not Available | Negative | 1503301 - 1504362 | 37327.3 |
| ribose 5-phosphate isomerase | HMPREF1862_01418 | Not Available | Negative | 1504419 - 1504910 | 17572.1 |
| transketolase | HMPREF1862_01419 | Not Available | Negative | 1505001 - 1507118 | 75995.4 |
| hypothetical protein | HMPREF1862_01420 | Not Available | Negative | 1507226 - 1507537 | 11487.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
