Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionyl-trna formyltransferase | HMPREF1862_01401 | Not Available | Positive | 1485127 - 1486080 | 34541.4 |
| putative ribosomal rna small subunit methyltransferase b | HMPREF1862_01402 | Not Available | Positive | 1486080 - 1487594 | 54803.3 |
| ribulose-phosphate 3-epimerase | HMPREF1862_01403 | Not Available | Positive | 1487609 - 1488268 | 23570.3 |
| phosphoribosyl-atp diphosphatase | HMPREF1862_01404 | Not Available | Positive | 1488410 - 1488673 | 9799.68 |
| atp phosphoribosyltransferase | HMPREF1862_01405 | Not Available | Positive | 1488682 - 1489527 | 30314.3 |
| hypothetical protein | HMPREF1862_01406 | Not Available | Negative | 1489614 - 1490744 | 39994.0 |
| hypothetical protein | HMPREF1862_01407 | Not Available | Positive | 1490809 - 1491135 | 11761.5 |
| dead/deah box helicase | HMPREF1862_01408 | Not Available | Positive | 1491136 - 1493934 | 102031.0 |
| apolipoprotein n-acyltransferase | HMPREF1862_01409 | Not Available | Positive | 1493919 - 1495526 | 58622.1 |
| glycosyltransferase, group 2 family protein | HMPREF1862_01410 | Not Available | Positive | 1495523 - 1496260 | 26975.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
