Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate kinase | HMPREF1862_01391 | Not Available | Positive | 1476543 - 1477082 | 19435.5 |
| translation elongation factor p | HMPREF1862_01392 | Not Available | Positive | 1477154 - 1477717 | 21031.0 |
| transcription antitermination factor nusb | HMPREF1862_01393 | Not Available | Positive | 1477724 - 1478173 | 16742.7 |
| putative dihydroorotase | HMPREF1862_01394 | Not Available | Positive | 1478245 - 1479543 | 46686.7 |
| orotidine 5'-phosphate decarboxylase | HMPREF1862_01395 | Not Available | Positive | 1479586 - 1480407 | 28130.3 |
| mihf protein | HMPREF1862_01396 | Not Available | Positive | 1480489 - 1480818 | 12153.0 |
| guanylate kinase | HMPREF1862_01397 | Not Available | Positive | 1480908 - 1481459 | 20115.9 |
| dna-directed rna polymerase, omega subunit | HMPREF1862_01398 | Not Available | Positive | 1481515 - 1481790 | 9914.6 |
| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase | HMPREF1862_01399 | Not Available | Positive | 1481798 - 1483009 | 42792.6 |
| putative primosomal protein | HMPREF1862_01400 | Not Available | Positive | 1483006 - 1485084 | 75635.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
