Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylformylglycinamidine cyclo-ligase | HMPREF1862_00120 | Not Available | Negative | 113933 - 114916 | 34984.3 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | HMPREF1862_00121 | Not Available | Negative | 114998 - 115708 | 26810.2 |
| phosphoribosylaminoimidazole carboxylase, catalytic subunit | HMPREF1862_00122 | Not Available | Negative | 115739 - 116209 | 16248.8 |
| phosphoribosylformylglycinamidine synthase | HMPREF1862_00123 | Not Available | Negative | 116200 - 119646 | 126679.0 |
| hypothetical protein | HMPREF1862_00124 | Not Available | Positive | 119783 - 119938 | 6032.07 |
| hypothetical protein | HMPREF1862_00125 | Not Available | Positive | 119919 - 120347 | 15307.5 |
| cupin domain protein | HMPREF1862_00126 | Not Available | Negative | 120516 - 120971 | 16764.4 |
| hypothetical protein | HMPREF1862_00127 | Not Available | Positive | 121213 - 121413 | 7862.83 |
| hypothetical protein | HMPREF1862_00129 | Not Available | Negative | 121469 - 121624 | 5465.69 |
| hypothetical protein | HMPREF1862_00128 | Not Available | Positive | 121612 - 122085 | 17233.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
