Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01362 | Not Available | Negative | 1451212 - 1451643 | 15863.9 |
| hypothetical protein | HMPREF1862_01361 | Not Available | Positive | 1451622 - 1451741 | 4471.32 |
| fad dependent oxidoreductase | HMPREF1862_01363 | Not Available | Negative | 1451996 - 1453744 | 63681.7 |
| hypothetical protein | HMPREF1862_01364 | Not Available | Negative | 1454053 - 1454217 | 5905.06 |
| hypothetical protein | HMPREF1862_01365 | Not Available | Positive | 1454423 - 1454608 | 6688.99 |
| transcriptional regulator, tetr family | HMPREF1862_01366 | Not Available | Negative | 1454941 - 1455642 | 26698.4 |
| transporter, major facilitator family protein | HMPREF1862_01367 | Not Available | Positive | 1455736 - 1456959 | 43082.7 |
| hypothetical protein | HMPREF1862_01368 | Not Available | Positive | 1457291 - 1457869 | 20514.0 |
| transposase, is605 family | HMPREF1862_01369 | Not Available | Negative | 1457855 - 1459195 | 50432.3 |
| transposase-like protein | HMPREF1862_01370 | Not Available | Positive | 1459261 - 1459638 | 14770.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
