Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-pro | Not Available | Not Available | Positive | 1445988 - 1446061 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 1446137 - 1446210 | Not Available |
| hypothetical protein | HMPREF1862_01353 | Not Available | Negative | 1446454 - 1447233 | 28433.0 |
| abc transporter, atp-binding protein | HMPREF1862_01354 | Not Available | Negative | 1447230 - 1448069 | 29229.7 |
| hypothetical protein | HMPREF1862_01355 | Not Available | Negative | 1448066 - 1448392 | 12326.6 |
| hypothetical protein | HMPREF1862_01356 | Not Available | Negative | 1448389 - 1449084 | 25228.0 |
| transcriptional regulator, padr family | HMPREF1862_01357 | Not Available | Negative | 1449084 - 1449443 | 13297.3 |
| hypothetical protein | HMPREF1862_01358 | Not Available | Positive | 1449607 - 1449792 | 6483.27 |
| hypothetical protein | HMPREF1862_01359 | Not Available | Positive | 1449789 - 1450412 | 22567.0 |
| hypothetical protein | HMPREF1862_01360 | Not Available | Positive | 1450729 - 1450977 | 9298.02 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
