Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminopeptidase i zinc metalloprotease | HMPREF1862_01341 | Not Available | Negative | 1438109 - 1439386 | 46016.3 |
| hypothetical protein | HMPREF1862_01342 | Not Available | Negative | 1439476 - 1440531 | 39449.1 |
| hypothetical protein | HMPREF1862_01343 | Not Available | Positive | 1440581 - 1440700 | 4367.47 |
| serine o-acetyltransferase | HMPREF1862_01344 | Not Available | Negative | 1440749 - 1441333 | 20520.3 |
| cysteine synthase a | HMPREF1862_01345 | Not Available | Negative | 1441342 - 1442277 | 32283.1 |
| yigz family protein | HMPREF1862_01346 | Not Available | Negative | 1442666 - 1443295 | 22957.2 |
| ribosomal protein l32 | HMPREF1862_01347 | Not Available | Positive | 1443513 - 1443695 | 6686.09 |
| hypothetical protein | HMPREF1862_01348 | Not Available | Negative | 1443826 - 1444653 | 30156.2 |
| abc transporter, atp-binding protein | HMPREF1862_01349 | Not Available | Negative | 1444650 - 1445459 | 29293.1 |
| transcriptional regulator, gntr family | HMPREF1862_01350 | Not Available | Negative | 1445452 - 1445823 | 13860.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
