Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-pro | Not Available | Not Available | Positive | 1427149 - 1427225 | Not Available |
| excinuclease abc, b subunit | HMPREF1862_01332 | Not Available | Positive | 1427347 - 1429440 | 79451.8 |
| e1-e2 atpase | HMPREF1862_01333 | Not Available | Positive | 1429437 - 1431977 | 89748.6 |
| integral membrane protein, terc family | HMPREF1862_01334 | Not Available | Positive | 1432105 - 1433148 | 39085.6 |
| nmt1/thi5-like protein | HMPREF1862_01335 | Not Available | Negative | 1433231 - 1434145 | 34108.9 |
| abc transporter, atp-binding protein | HMPREF1862_01336 | Not Available | Negative | 1434155 - 1434946 | 28858.2 |
| abc transporter, permease protein | HMPREF1862_01337 | Not Available | Negative | 1434943 - 1435692 | 26415.3 |
| nmt1/thi5-like protein | HMPREF1862_01338 | Not Available | Negative | 1435689 - 1436720 | 37254.2 |
| phosphotransferase enzyme family protein | HMPREF1862_01339 | Not Available | Negative | 1436708 - 1437841 | 42148.3 |
| Trna-val | Not Available | Not Available | Positive | 1438027 - 1438101 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
