Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux abc transporter, permease protein | HMPREF1862_01321 | Not Available | Positive | 1416264 - 1417484 | 43659.7 |
| abc transporter, atp-binding protein | HMPREF1862_01322 | Not Available | Positive | 1417485 - 1418189 | 25311.4 |
| putative atp synthase f0, a subunit | HMPREF1862_01323 | Not Available | Positive | 1418387 - 1420024 | 58386.0 |
| hypothetical protein | HMPREF1862_01324 | Not Available | Positive | 1420024 - 1420668 | 23378.8 |
| tat pathway signal sequence domain protein | HMPREF1862_01325 | Not Available | Positive | 1420679 - 1421953 | 46346.8 |
| efflux abc transporter, permease protein | HMPREF1862_01326 | Not Available | Positive | 1421975 - 1423276 | 46492.8 |
| efflux abc transporter, permease protein | HMPREF1862_01327 | Not Available | Positive | 1423301 - 1424446 | 40689.0 |
| abc transporter, atp-binding protein | HMPREF1862_01328 | Not Available | Positive | 1424427 - 1425194 | 28270.7 |
| hypothetical protein | HMPREF1862_01329 | Not Available | Positive | 1425187 - 1425615 | 15126.7 |
| hypothetical protein | HMPREF1862_01330 | Not Available | Positive | 1425673 - 1426518 | 29629.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
