Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imidazoleglycerol phosphate synthase, cyclase subunit | HMPREF1862_01311 | Not Available | Positive | 1409599 - 1410369 | 26797.0 |
| phosphoribosyl-amp cyclohydrolase | HMPREF1862_01312 | Not Available | Positive | 1410366 - 1410743 | 13711.1 |
| indole-3-glycerol phosphate synthase | HMPREF1862_01313 | Not Available | Positive | 1410796 - 1411638 | 30107.1 |
| prolipoprotein diacylglyceryl transferase | HMPREF1862_01314 | Not Available | Positive | 1411650 - 1412531 | 33199.9 |
| pyruvate kinase | HMPREF1862_01315 | Not Available | Positive | 1412680 - 1414023 | 48289.9 |
| hypothetical protein | HMPREF1862_01316 | Not Available | Positive | 1414317 - 1414523 | 7469.88 |
| hypothetical protein | HMPREF1862_01317 | Not Available | Positive | 1414528 - 1414650 | 4493.51 |
| nitroreductase family protein | HMPREF1862_01318 | Not Available | Negative | 1414712 - 1415233 | 19818.6 |
| hypothetical protein | HMPREF1862_01319 | Not Available | Negative | 1415332 - 1415574 | 9104.11 |
| hypothetical protein | HMPREF1862_01320 | Not Available | Positive | 1415739 - 1416257 | 18237.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
