Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxidoreductase, aldo/keto reductase family protein | HMPREF1862_01301 | Not Available | Negative | 1398908 - 1399843 | 33675.8 |
| undecaprenyl-diphosphatase uppp | HMPREF1862_01302 | Not Available | Positive | 1399921 - 1400916 | 35933.3 |
| had hydrolase, family ia, variant 3 | HMPREF1862_01303 | Not Available | Positive | 1400933 - 1401574 | 22949.5 |
| hypothetical protein | HMPREF1862_01304 | Not Available | Negative | 1401566 - 1402432 | 32897.0 |
| trna methyltransferase complex gcd14 subunit | HMPREF1862_01305 | Not Available | Positive | 1402595 - 1403602 | 37388.4 |
| proteasome atpase | HMPREF1862_01306 | Not Available | Positive | 1403680 - 1405221 | 55877.6 |
| proteasome accessory factor pafa2 | HMPREF1862_01307 | Not Available | Positive | 1405230 - 1406831 | 58440.9 |
| ubiquitin-like protein pup | HMPREF1862_01308 | Not Available | Positive | 1406859 - 1407041 | 6273.29 |
| proteasome accessory factor pafa | HMPREF1862_01309 | Not Available | Positive | 1407045 - 1408427 | 51059.9 |
| hypothetical protein | HMPREF1862_01310 | Not Available | Positive | 1408433 - 1409476 | 36986.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
