Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01291 | Not Available | Negative | 1390402 - 1391409 | 36688.7 |
| dimethylsulfoxide reductase, chain b | HMPREF1862_01292 | Not Available | Negative | 1391450 - 1392136 | 25316.9 |
| hypothetical protein | HMPREF1862_01293 | Not Available | Negative | 1392309 - 1392668 | 12943.5 |
| anaerobic dimethyl sulfoxide reductase, a subunit, dmsa/ynfe family | HMPREF1862_01294 | Not Available | Negative | 1392705 - 1394906 | 80253.2 |
| hypothetical protein | HMPREF1862_01295 | Not Available | Positive | 1395499 - 1395630 | 4737.87 |
| Trna-leu | Not Available | Not Available | Positive | 1395681 - 1395771 | Not Available |
| haloacid dehalogenase-like hydrolase | HMPREF1862_01297 | Not Available | Positive | 1395932 - 1396639 | 26044.1 |
| hypothetical protein | HMPREF1862_01298 | Not Available | Positive | 1396655 - 1397164 | 19306.0 |
| pyridine nucleotide-disulfide oxidoreductase | HMPREF1862_01299 | Not Available | Positive | 1397345 - 1398439 | 39084.0 |
| hypothetical protein | HMPREF1862_01300 | Not Available | Positive | 1398478 - 1398891 | 15506.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
