Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excinuclease abc, c subunit | HMPREF1862_00110 | Not Available | Negative | 101980 - 103941 | 73819.4 |
| nad(p)-specific glutamate dehydrogenase | HMPREF1862_00111 | Not Available | Positive | 104208 - 105545 | 48636.7 |
| zinc ribbon domain protein | HMPREF1862_00112 | Not Available | Negative | 105573 - 106304 | 27867.2 |
| dinuclear metal center protein, ybgi family | HMPREF1862_00113 | Not Available | Negative | 106316 - 107113 | 28147.5 |
| hypothetical protein | HMPREF1862_00114 | Not Available | Positive | 107386 - 108834 | 53691.5 |
| aspartate carbamoyltransferase | HMPREF1862_00115 | Not Available | Negative | 108925 - 109965 | 38106.8 |
| hypothetical protein | HMPREF1862_00116 | Not Available | Negative | 109949 - 110077 | 4941.21 |
| putative membrane protein | HMPREF1862_00117 | Not Available | Positive | 110213 - 111172 | 34379.9 |
| amidophosphoribosyltransferase | HMPREF1862_00118 | Not Available | Negative | 111239 - 112690 | 52553.0 |
| phosphoribosylamine--glycine ligase | HMPREF1862_00119 | Not Available | Negative | 112700 - 113893 | 42627.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
