Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fes assembly atpase sufc | HMPREF1862_01261 | Not Available | Positive | 1361043 - 1361789 | 26862.1 |
| cysteine desulfurase, sufs subfamily | HMPREF1862_01262 | Not Available | Positive | 1361839 - 1363107 | 45649.4 |
| suf system fes assembly protein, nifu family | HMPREF1862_01263 | Not Available | Positive | 1363107 - 1363568 | 16705.6 |
| hypothetical protein | HMPREF1862_01264 | Not Available | Positive | 1363561 - 1364115 | 19950.2 |
| putative arginine deiminase | HMPREF1862_01265 | Not Available | Positive | 1364159 - 1365388 | 45434.2 |
| ornithine carbamoyltransferase | HMPREF1862_01266 | Not Available | Positive | 1365439 - 1366443 | 37402.5 |
| had hydrolase family | HMPREF1862_01267 | Not Available | Negative | 1366533 - 1367324 | 28407.9 |
| putative deoxyribonucleoside regulator | HMPREF1862_01268 | Not Available | Negative | 1367492 - 1368445 | 34151.5 |
| hypothetical protein | HMPREF1862_01270 | Not Available | Negative | 1368713 - 1369012 | 11335.7 |
| abc transporter, atp-binding protein | HMPREF1862_01269 | Not Available | Positive | 1369011 - 1370819 | 66358.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
