Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna repair protein recn | HMPREF1862_01251 | Not Available | Positive | 1350035 - 1351720 | 59829.2 |
| thiaminepyrophosphokinase, catalytic domain protein | HMPREF1862_01252 | Not Available | Positive | 1351787 - 1352926 | 40602.3 |
| hypothetical protein | HMPREF1862_01253 | Not Available | Positive | 1352943 - 1353869 | 32180.4 |
| hypothetical protein | HMPREF1862_01254 | Not Available | Positive | 1353869 - 1354783 | 30544.1 |
| putative integral membrane protein mvin | HMPREF1862_01255 | Not Available | Positive | 1354780 - 1356444 | 57731.0 |
| hydrolase, nudix family | HMPREF1862_01256 | Not Available | Positive | 1356477 - 1357145 | 24741.1 |
| hypothetical protein | HMPREF1862_01257 | Not Available | Positive | 1357336 - 1358028 | 24610.3 |
| fes assembly protein sufb | HMPREF1862_01258 | Not Available | Positive | 1358084 - 1359520 | 53499.2 |
| fes assembly protein sufd | HMPREF1862_01259 | Not Available | Positive | 1359520 - 1360701 | 43345.2 |
| rieske | HMPREF1862_01260 | Not Available | Positive | 1360698 - 1361042 | 12115.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
