Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01241 | Not Available | Negative | 1339039 - 1339158 | 4236.13 |
| chloride transporter, clc family | HMPREF1862_01242 | Not Available | Negative | 1339333 - 1341132 | 63209.6 |
| 1-deoxy-d-xylulose-5-phosphate synthase | HMPREF1862_01243 | Not Available | Positive | 1341229 - 1343100 | 66676.3 |
| sugar-binding domain protein | HMPREF1862_01244 | Not Available | Positive | 1343247 - 1344209 | 34786.5 |
| nad-dependent glycerol-3-phosphate dehydrogenase | HMPREF1862_01245 | Not Available | Positive | 1344206 - 1345312 | 39557.5 |
| hypothetical protein | HMPREF1862_01246 | Not Available | Positive | 1345569 - 1346147 | 19111.4 |
| had hydrolase, family iia | HMPREF1862_01247 | Not Available | Positive | 1346234 - 1348150 | 67122.8 |
| hypothetical protein | HMPREF1862_01248 | Not Available | Positive | 1348140 - 1348337 | 7102.23 |
| ribosomal rna large subunit methyltransferase j | HMPREF1862_01249 | Not Available | Positive | 1348454 - 1349176 | 25452.4 |
| putative inorganic polyphosphate/atp-nad kinase | HMPREF1862_01250 | Not Available | Positive | 1349198 - 1350031 | 29647.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
