Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mercury(ii) reductase | HMPREF1862_01231 | Not Available | Negative | 1328167 - 1329807 | 58742.3 |
| hg(ii)-responsive transcriptional regulator | HMPREF1862_01232 | Not Available | Negative | 1329836 - 1330228 | 15561.9 |
| hypothetical protein | HMPREF1862_01233 | Not Available | Positive | 1330501 - 1330710 | 8251.42 |
| transcriptional regulator, tetr family | HMPREF1862_01234 | Not Available | Positive | 1330974 - 1331519 | 20568.9 |
| hypothetical protein | HMPREF1862_01235 | Not Available | Positive | 1331572 - 1332018 | 16456.0 |
| abc transporter, substrate-binding protein | HMPREF1862_01236 | Not Available | Positive | 1332200 - 1333150 | 34640.1 |
| copper abc transporter, atp-binding protein nosf family protein | HMPREF1862_01237 | Not Available | Positive | 1333143 - 1333808 | 24207.4 |
| abc 3 transport family protein | HMPREF1862_01238 | Not Available | Positive | 1333805 - 1334596 | 27757.4 |
| hypothetical protein | HMPREF1862_01239 | Not Available | Positive | 1334606 - 1336048 | 52203.1 |
| aconitate hydratase 1 | HMPREF1862_01240 | Not Available | Positive | 1336226 - 1339042 | 102415.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
