Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01221 | Not Available | Positive | 1319131 - 1319796 | 23331.8 |
| nucleic acid-binding domain protein | HMPREF1862_01222 | Not Available | Positive | 1319796 - 1320128 | 11442.7 |
| hypothetical protein | HMPREF1862_01223 | Not Available | Positive | 1320121 - 1320867 | 27435.6 |
| trka protein | HMPREF1862_01224 | Not Available | Negative | 1320864 - 1321565 | 25000.8 |
| trka protein | HMPREF1862_01225 | Not Available | Negative | 1321567 - 1322232 | 24701.4 |
| amino acid permease | HMPREF1862_01226 | Not Available | Positive | 1322311 - 1324491 | 79614.9 |
| trna (uracil-5-)-methyltransferase | HMPREF1862_01227 | Not Available | Positive | 1324587 - 1325909 | 46852.7 |
| hypothetical protein | HMPREF1862_01228 | Not Available | Positive | 1326185 - 1326364 | 6511.39 |
| hypothetical protein | HMPREF1862_01229 | Not Available | Negative | 1326543 - 1326695 | 5828.91 |
| transposase | HMPREF1862_01230 | Not Available | Negative | 1326685 - 1327725 | 41533.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
