Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyprenyl synthetase | HMPREF1862_01211 | Not Available | Negative | 1305458 - 1306528 | 38778.9 |
| rna polymerase sigma factor rpod | HMPREF1862_01212 | Not Available | Positive | 1306665 - 1308590 | 69196.1 |
| hypothetical protein | HMPREF1862_01213 | Not Available | Positive | 1308631 - 1308951 | 11685.5 |
| dna gyrase, b subunit protein | HMPREF1862_01214 | Not Available | Positive | 1309213 - 1311255 | 75302.0 |
| hypothetical protein | HMPREF1862_01215 | Not Available | Positive | 1311296 - 1312384 | 40203.8 |
| hypothetical protein | HMPREF1862_01216 | Not Available | Positive | 1312384 - 1313388 | 36901.4 |
| dna gyrase/topoisomerase iv, a subunit | HMPREF1862_01217 | Not Available | Negative | 1313429 - 1316008 | 93013.6 |
| type i phosphodiesterase / nucleotide pyrophosphatase | HMPREF1862_01218 | Not Available | Positive | 1316076 - 1317245 | 43223.8 |
| hypothetical protein | HMPREF1862_01219 | Not Available | Negative | 1317283 - 1318584 | 46594.1 |
| hypothetical protein | HMPREF1862_01220 | Not Available | Positive | 1318753 - 1319055 | 10850.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
