Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01201 | Not Available | Negative | 1295101 - 1295226 | 5072.32 |
| superoxide dismutase | HMPREF1862_01202 | Not Available | Negative | 1295300 - 1295926 | 23161.2 |
| hypothetical protein | HMPREF1862_01203 | Not Available | Positive | 1296188 - 1296574 | 14295.1 |
| giy-yig catalytic domain protein | HMPREF1862_01204 | Not Available | Negative | 1296625 - 1298274 | 61043.1 |
| hypothetical protein | HMPREF1862_01205 | Not Available | Negative | 1298433 - 1298834 | 14979.2 |
| acyltransferase | HMPREF1862_01206 | Not Available | Positive | 1298909 - 1299718 | 29175.3 |
| pyrophosphate--fructose-6-phosphate 1-phosphotransferase | HMPREF1862_01207 | Not Available | Positive | 1299953 - 1301164 | 44070.6 |
| 3-deoxy-7-phosphoheptulonate synthase | HMPREF1862_01208 | Not Available | Positive | 1301430 - 1302836 | 51862.1 |
| pasta domain protein | HMPREF1862_01209 | Not Available | Negative | 1302910 - 1305021 | 75781.7 |
| hypothetical protein | HMPREF1862_01210 | Not Available | Positive | 1305106 - 1305447 | 12365.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
