Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01191 | Not Available | Negative | 1286689 - 1286826 | 5237.49 |
| rna methyltransferase, trmh family | HMPREF1862_01192 | Not Available | Negative | 1286852 - 1287703 | 30206.5 |
| hypothetical protein | HMPREF1862_01193 | Not Available | Positive | 1287852 - 1288484 | 23000.2 |
| dihydroorotate oxidase | HMPREF1862_01194 | Not Available | Positive | 1288574 - 1289650 | 38644.8 |
| hypothetical protein | HMPREF1862_01195 | Not Available | Negative | 1289647 - 1290276 | 24223.8 |
| peptidase dimerization domain protein | HMPREF1862_01196 | Not Available | Positive | 1290393 - 1291742 | 47704.1 |
| hypothetical protein | HMPREF1862_01197 | Not Available | Positive | 1291743 - 1292744 | 35765.6 |
| iron-sulfur cluster assembly accessory protein | HMPREF1862_01198 | Not Available | Positive | 1292815 - 1293174 | 12983.2 |
| peptidyl-prolyl cis-trans isomerase, fkbp-type | HMPREF1862_01199 | Not Available | Positive | 1293194 - 1294090 | 30818.1 |
| peptidyl-prolyl cis-trans isomerase, fkbp-type | HMPREF1862_01200 | Not Available | Positive | 1294155 - 1295096 | 32890.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
