Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-lactate dehydrogenase | HMPREF1862_01181 | Not Available | Positive | 1272347 - 1273339 | 35046.3 |
| gaf domain protein | HMPREF1862_01182 | Not Available | Negative | 1273366 - 1275159 | 64053.8 |
| thiol reductant abc exporter, cydc subunit | HMPREF1862_01183 | Not Available | Negative | 1275149 - 1276960 | 64342.1 |
| thiol reductant abc exporter, cydd subunit | HMPREF1862_01184 | Not Available | Negative | 1276961 - 1278742 | 63698.1 |
| hypothetical protein | HMPREF1862_01185 | Not Available | Negative | 1278815 - 1278940 | 4453.17 |
| cytochrome d ubiquinol oxidase, subunit ii | HMPREF1862_01186 | Not Available | Negative | 1279140 - 1280276 | 41075.6 |
| bacterial cytochrome ubiquinol oxidase | HMPREF1862_01187 | Not Available | Negative | 1280298 - 1281833 | 56344.9 |
| s1 rna binding domain protein | HMPREF1862_01188 | Not Available | Positive | 1282194 - 1284677 | 90712.5 |
| sodium:neurotransmitter symporter family protein | HMPREF1862_01189 | Not Available | Positive | 1284871 - 1286442 | 56762.0 |
| hypothetical protein | HMPREF1862_01190 | Not Available | Positive | 1286445 - 1286666 | 7947.51 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
