Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endopeptidase clp | HMPREF1862_00100 | Not Available | Negative | 91493 - 92188 | 25191.2 |
| trigger factor | HMPREF1862_00101 | Not Available | Negative | 92367 - 93701 | 49466.6 |
| bacterial capsule synthesis protein | HMPREF1862_00102 | Not Available | Negative | 93906 - 95225 | 46784.6 |
| preprotein translocase, secg subunit | HMPREF1862_00103 | Not Available | Negative | 95272 - 95520 | 8624.94 |
| triose-phosphate isomerase | HMPREF1862_00104 | Not Available | Negative | 95650 - 96423 | 27751.8 |
| phosphoglycerate kinase | HMPREF1862_00105 | Not Available | Negative | 96428 - 97624 | 42244.6 |
| glyceraldehyde-3-phosphate dehydrogenase, type i | HMPREF1862_00106 | Not Available | Negative | 97733 - 98740 | 36215.1 |
| hypothetical protein | HMPREF1862_00107 | Not Available | Negative | 98962 - 99996 | 37393.9 |
| hypothetical protein | HMPREF1862_00108 | Not Available | Negative | 100002 - 101000 | 35820.0 |
| hypothetical protein | HMPREF1862_00109 | Not Available | Negative | 100997 - 101950 | 35573.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
