Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome recycling factor | HMPREF1862_01161 | Not Available | Positive | 1251631 - 1252188 | 20815.9 |
| phosphatidate cytidylyltransferase | HMPREF1862_01162 | Not Available | Positive | 1252234 - 1253079 | 29466.4 |
| 23s rrna methyltransferase | HMPREF1862_01163 | Not Available | Positive | 1253098 - 1254426 | 48209.0 |
| diviva domain repeat protein | HMPREF1862_01164 | Not Available | Positive | 1254419 - 1254970 | 20572.0 |
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | HMPREF1862_01165 | Not Available | Positive | 1255024 - 1256238 | 42468.6 |
| putative rip metalloprotease rsep | HMPREF1862_01166 | Not Available | Positive | 1256248 - 1257537 | 45572.2 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | HMPREF1862_01167 | Not Available | Positive | 1257694 - 1258824 | 39917.2 |
| proline--trna ligase | HMPREF1862_01168 | Not Available | Positive | 1259209 - 1261065 | 67992.5 |
| peptide deformylase | HMPREF1862_01169 | Not Available | Positive | 1261068 - 1261559 | 18436.9 |
| hypothetical protein | HMPREF1862_01170 | Not Available | Positive | 1261962 - 1262498 | 19682.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
