Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alkyl hydroperoxide reductase, f subunit | HMPREF1862_01151 | Not Available | Positive | 1242082 - 1243638 | 56101.3 |
| tigr00252 family protein | HMPREF1862_01152 | Not Available | Positive | 1243799 - 1244167 | 13656.6 |
| mg chelatase-like protein | HMPREF1862_01153 | Not Available | Positive | 1244169 - 1245611 | 51204.6 |
| hypothetical protein | HMPREF1862_01154 | Not Available | Positive | 1245598 - 1245723 | 4725.6 |
| dna protecting protein dpra | HMPREF1862_01155 | Not Available | Positive | 1245754 - 1246923 | 41701.9 |
| phage integrase, sam-like domain protein | HMPREF1862_01156 | Not Available | Positive | 1246902 - 1247837 | 34508.6 |
| peptidase, m23 family | HMPREF1862_01157 | Not Available | Negative | 1247991 - 1248287 | 10370.6 |
| ribosomal protein s2 | HMPREF1862_01158 | Not Available | Positive | 1248953 - 1249834 | 32287.4 |
| translation elongation factor ts | HMPREF1862_01159 | Not Available | Positive | 1249869 - 1250705 | 29960.9 |
| ump kinase | HMPREF1862_01160 | Not Available | Positive | 1250928 - 1251626 | 24596.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
