Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inositol monophosphatase family protein | HMPREF1862_01141 | Not Available | Positive | 1234859 - 1235911 | 38194.0 |
| ribosomal protein s16 | HMPREF1862_01142 | Not Available | Positive | 1236202 - 1236693 | 18150.3 |
| kh domain protein | HMPREF1862_01143 | Not Available | Positive | 1236696 - 1236944 | 9210.22 |
| 16s rrna processing protein rimm | HMPREF1862_01144 | Not Available | Positive | 1237016 - 1237519 | 17930.2 |
| trna (guanine-n(1)-)-methyltransferase | HMPREF1862_01145 | Not Available | Positive | 1237540 - 1238934 | 51333.3 |
| ribosomal protein l19 | HMPREF1862_01146 | Not Available | Positive | 1239070 - 1239420 | 13179.8 |
| signal peptidase i | HMPREF1862_01147 | Not Available | Positive | 1239497 - 1240264 | 28155.0 |
| ribonuclease hii | HMPREF1862_01148 | Not Available | Positive | 1240266 - 1241105 | 29289.7 |
| hypothetical protein | HMPREF1862_01149 | Not Available | Positive | 1241102 - 1241407 | 12114.3 |
| alkyl hydroperoxide reductase subunit c | HMPREF1862_01150 | Not Available | Positive | 1241516 - 1242079 | 21002.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
