Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| g5 domain protein | HMPREF1862_01121 | Not Available | Positive | 1205274 - 1206602 | 48676.3 |
| hypothetical protein | HMPREF1862_01122 | Not Available | Positive | 1206623 - 1207033 | 14655.7 |
| hypothetical protein | HMPREF1862_01123 | Not Available | Negative | 1207206 - 1207325 | 4298.18 |
| fibronectin type iii domain protein | HMPREF1862_01124 | Not Available | Positive | 1207441 - 1213185 | 201141.0 |
| atpase family protein | HMPREF1862_01125 | Not Available | Positive | 1213182 - 1214150 | 35010.9 |
| hypothetical protein | HMPREF1862_01126 | Not Available | Positive | 1214154 - 1215404 | 45206.6 |
| transglutaminase-like protein | HMPREF1862_01127 | Not Available | Positive | 1215401 - 1218058 | 95651.6 |
| kinase domain protein | HMPREF1862_01128 | Not Available | Positive | 1218033 - 1219490 | 51470.4 |
| fha domain protein | HMPREF1862_01129 | Not Available | Positive | 1219530 - 1220237 | 25115.7 |
| phosphoenolpyruvate-protein phosphotransferase | HMPREF1862_01130 | Not Available | Negative | 1220239 - 1221843 | 56317.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
