Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-formamidopyrimidine glycosylase | HMPREF1862_01101 | Not Available | Positive | 1181411 - 1182319 | 33469.2 |
| response regulator receiver domain protein | HMPREF1862_01102 | Not Available | Positive | 1182478 - 1183137 | 23886.7 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | HMPREF1862_01103 | Not Available | Negative | 1183540 - 1184523 | 34404.1 |
| septum formation protein maf | HMPREF1862_01104 | Not Available | Negative | 1184541 - 1185263 | 26013.4 |
| adenylate/guanylate cyclase catalytic domain protein | HMPREF1862_01105 | Not Available | Positive | 1185522 - 1186577 | 38956.9 |
| putative sensory transduction protein regx3 | HMPREF1862_01106 | Not Available | Positive | 1186638 - 1187318 | 24908.9 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | HMPREF1862_01107 | Not Available | Positive | 1187325 - 1188647 | 47973.2 |
| hypothetical protein | HMPREF1862_01108 | Not Available | Negative | 1188758 - 1189894 | 43011.2 |
| kinase domain protein | HMPREF1862_01109 | Not Available | Positive | 1190150 - 1191898 | 62244.1 |
| hypothetical protein | HMPREF1862_01110 | Not Available | Positive | 1191964 - 1192923 | 34077.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
