Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01091 | Not Available | Positive | 1172570 - 1172770 | 7154.81 |
| tm2 domain protein | HMPREF1862_01092 | Not Available | Negative | 1172771 - 1173343 | 19762.3 |
| ribosomal protein l28 | HMPREF1862_01093 | Not Available | Negative | 1173483 - 1173668 | 6646.16 |
| hypothetical protein | HMPREF1862_01094 | Not Available | Positive | 1173863 - 1175797 | 69238.9 |
| putative atp-dependent dna helicase recg | HMPREF1862_01095 | Not Available | Positive | 1175794 - 1178031 | 81643.0 |
| rna methyltransferase, rsmd family | HMPREF1862_01096 | Not Available | Positive | 1178098 - 1178700 | 21950.9 |
| pantetheine-phosphate adenylyltransferase | HMPREF1862_01097 | Not Available | Positive | 1178764 - 1179288 | 18695.1 |
| hypothetical protein | HMPREF1862_01098 | Not Available | Positive | 1179304 - 1179993 | 24934.4 |
| putative acr | HMPREF1862_01099 | Not Available | Positive | 1180049 - 1180639 | 21408.5 |
| ribonuclease iii | HMPREF1862_01100 | Not Available | Positive | 1180636 - 1181355 | 26485.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
