Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal peptidase ii | HMPREF1862_01081 | Not Available | Positive | 1164898 - 1165440 | 19369.2 |
| pseudouridine synthase, rlua family | HMPREF1862_01082 | Not Available | Positive | 1165433 - 1166353 | 33007.1 |
| comea protein | HMPREF1862_01083 | Not Available | Positive | 1166377 - 1167222 | 28983.6 |
| comec/rec2-like protein | HMPREF1862_01084 | Not Available | Positive | 1167230 - 1168858 | 57010.7 |
| dna polymerase iii, delta subunit | HMPREF1862_01085 | Not Available | Positive | 1168840 - 1169808 | 34271.2 |
| transcriptional regulator, fur family | HMPREF1862_01086 | Not Available | Positive | 1169839 - 1170240 | 15178.9 |
| rna methyltransferase, trmh family | HMPREF1862_01087 | Not Available | Negative | 1170265 - 1171074 | 27954.7 |
| ribosomal protein l20 | HMPREF1862_01088 | Not Available | Negative | 1171120 - 1171500 | 14723.9 |
| ribosomal protein l35 | HMPREF1862_01089 | Not Available | Negative | 1171522 - 1171722 | 7538.37 |
| translation initiation factor if-3 | HMPREF1862_01090 | Not Available | Negative | 1171785 - 1172480 | 26334.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
