Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excinuclease abc, a subunit | HMPREF1862_00090 | Not Available | Negative | 77657 - 80491 | 104360.0 |
| hypothetical protein | HMPREF1862_00091 | Not Available | Negative | 80539 - 81885 | 51091.7 |
| hypothetical protein | HMPREF1862_00092 | Not Available | Positive | 82052 - 83149 | 41866.5 |
| hypothetical protein | HMPREF1862_00093 | Not Available | Positive | 83153 - 84112 | 36413.6 |
| hypothetical protein | HMPREF1862_00094 | Not Available | Negative | 84409 - 84762 | 12633.7 |
| anticodon-binding domain protein | HMPREF1862_00095 | Not Available | Positive | 84781 - 87054 | 84611.3 |
| amp-binding enzyme | HMPREF1862_00096 | Not Available | Positive | 87074 - 88987 | 69221.7 |
| chorismate mutase | HMPREF1862_00097 | Not Available | Negative | 89040 - 89360 | 12045.5 |
| atp-dependent clp protease, atp-binding subunit clpx | HMPREF1862_00098 | Not Available | Negative | 89495 - 90736 | 45087.1 |
| endopeptidase clp | HMPREF1862_00099 | Not Available | Negative | 90822 - 91436 | 22644.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
