Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01061 | Not Available | Positive | 1146204 - 1147022 | 30309.9 |
| putative permease | HMPREF1862_01062 | Not Available | Positive | 1147146 - 1148621 | 51264.8 |
| putative phosphoserine transaminase | HMPREF1862_01063 | Not Available | Negative | 1148751 - 1149893 | 40552.1 |
| diphtheria toxin repressor | HMPREF1862_01064 | Not Available | Positive | 1150055 - 1150741 | 25528.6 |
| hypothetical protein | HMPREF1862_01065 | Not Available | Negative | 1150917 - 1151036 | 4448.3 |
| nlpc/p60 family protein | HMPREF1862_01066 | Not Available | Positive | 1151151 - 1151744 | 19974.6 |
| hypothetical protein | HMPREF1862_01067 | Not Available | Positive | 1151779 - 1151916 | 4966.06 |
| universal stress family protein | HMPREF1862_01068 | Not Available | Positive | 1152155 - 1153060 | 31170.8 |
| hypothetical protein | HMPREF1862_01069 | Not Available | Negative | 1154232 - 1154351 | 4565.68 |
| methionine adenosyltransferase | HMPREF1862_01070 | Not Available | Positive | 1154432 - 1155625 | 42889.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
