Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-galactopyranose mutase | HMPREF1862_01051 | Not Available | Positive | 1131267 - 1132394 | 43674.6 |
| abc-2 type transporter | HMPREF1862_01052 | Not Available | Positive | 1132530 - 1133264 | 27794.4 |
| putative o-antigen export system atp-binding protein rfbb | HMPREF1862_01053 | Not Available | Positive | 1133269 - 1134036 | 27952.0 |
| carbamoyl-phosphate synthase, small subunit | HMPREF1862_01054 | Not Available | Positive | 1134236 - 1135441 | 43081.0 |
| carbamoyl-phosphate synthase, large subunit | HMPREF1862_01055 | Not Available | Positive | 1135425 - 1138706 | 118016.0 |
| hypothetical protein | HMPREF1862_01056 | Not Available | Positive | 1138709 - 1139596 | 30562.1 |
| pspa/im30 family protein | HMPREF1862_01057 | Not Available | Negative | 1139810 - 1140523 | 26297.1 |
| hypothetical protein | HMPREF1862_01058 | Not Available | Negative | 1140592 - 1142574 | 69615.8 |
| hypothetical protein | HMPREF1862_01059 | Not Available | Negative | 1142663 - 1145710 | 107504.0 |
| cold-shock dna-binding domain protein | HMPREF1862_01060 | Not Available | Positive | 1145843 - 1146220 | 13521.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
