Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, tetr family | HMPREF1862_01041 | Not Available | Positive | 1122974 - 1123969 | 36289.2 |
| beta-lactamase | HMPREF1862_01042 | Not Available | Positive | 1123982 - 1124845 | 31337.4 |
| putative exodeoxyribonuclease iii | HMPREF1862_01043 | Not Available | Negative | 1124851 - 1125642 | 29798.1 |
| orotate phosphoribosyltransferase | HMPREF1862_01044 | Not Available | Positive | 1125684 - 1126259 | 20135.2 |
| oxidoreductase, short chain dehydrogenase/reductase family protein | HMPREF1862_01045 | Not Available | Positive | 1126349 - 1127035 | 24989.4 |
| rna methyltransferase, trmh family | HMPREF1862_01046 | Not Available | Positive | 1127040 - 1127651 | 22634.4 |
| fructose-bisphosphate aldolase, class ii | HMPREF1862_01047 | Not Available | Positive | 1127834 - 1128826 | 35802.7 |
| glycosyltransferase, group 2 family protein | HMPREF1862_01048 | Not Available | Positive | 1129190 - 1130176 | 36536.1 |
| oligosaccharide biosynthesis protein alg14 like protein | HMPREF1862_01049 | Not Available | Positive | 1130169 - 1130621 | 16906.8 |
| glycosyltransferase family 28 protein | HMPREF1862_01050 | Not Available | Positive | 1130618 - 1131154 | 19675.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
