Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01020 | Not Available | Positive | 1096333 - 1096482 | 5785.36 |
| hypothetical protein | HMPREF1862_01022 | Not Available | Positive | 1096521 - 1097507 | 34902.5 |
| aig2-like family protein | HMPREF1862_01023 | Not Available | Negative | 1097511 - 1098056 | 20516.5 |
| hypothetical protein | HMPREF1862_01024 | Not Available | Negative | 1098085 - 1098258 | 5898.17 |
| hsp20/alpha crystallin family protein | HMPREF1862_01025 | Not Available | Positive | 1098351 - 1098794 | 16428.5 |
| hypothetical protein | HMPREF1862_01026 | Not Available | Negative | 1098915 - 1103717 | 181547.0 |
| hypothetical protein | HMPREF1862_01027 | Not Available | Negative | 1103946 - 1104692 | 27783.3 |
| isocitrate dehydrogenase, nadp-dependent | HMPREF1862_01028 | Not Available | Positive | 1104885 - 1106111 | 45657.4 |
| hypothetical protein | HMPREF1862_01029 | Not Available | Positive | 1106405 - 1107160 | 26815.5 |
| 6-phosphofructokinase | HMPREF1862_01030 | Not Available | Positive | 1107183 - 1109450 | 82332.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
