Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp synthase f0, b subunit | HMPREF1862_01001 | Not Available | Positive | 1081138 - 1081692 | 20579.4 |
| atp synthase f1, delta subunit | HMPREF1862_01002 | Not Available | Positive | 1081692 - 1082522 | 29704.4 |
| atp synthase f1, alpha subunit | HMPREF1862_01003 | Not Available | Positive | 1082551 - 1084206 | 59967.4 |
| atp synthase f1, gamma subunit | HMPREF1862_01004 | Not Available | Positive | 1084209 - 1085132 | 34073.6 |
| atp synthase f1, beta subunit | HMPREF1862_01005 | Not Available | Positive | 1085160 - 1086605 | 52820.8 |
| atp synthase, delta/epsilon subunit, beta-sandwich domain protein | HMPREF1862_01006 | Not Available | Positive | 1086605 - 1086862 | 8866.64 |
| hypothetical protein | HMPREF1862_01007 | Not Available | Positive | 1086901 - 1087320 | 15879.3 |
| hypothetical protein | HMPREF1862_01008 | Not Available | Positive | 1087450 - 1088085 | 23317.0 |
| putative n-acetylglucosamine-6-phosphate deacetylase | HMPREF1862_01009 | Not Available | Positive | 1088126 - 1089346 | 42047.5 |
| hypothetical protein | HMPREF1862_01010 | Not Available | Positive | 1089347 - 1089628 | 10878.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
