Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative shikimate dehydrogenase | HMPREF1862_00079 | Not Available | Negative | 66539 - 67372 | 29435.8 |
| yceg family protein | HMPREF1862_00080 | Not Available | Negative | 67360 - 68616 | 45642.3 |
| rnase h domain protein, yqgf family | HMPREF1862_00081 | Not Available | Negative | 68616 - 69092 | 17080.5 |
| alanine--trna ligase | HMPREF1862_00082 | Not Available | Negative | 69092 - 71773 | 98155.8 |
| hypothetical protein | HMPREF1862_00083 | Not Available | Negative | 71827 - 72003 | 6380.01 |
| hypothetical protein | HMPREF1862_00084 | Not Available | Negative | 72003 - 72356 | 12405.1 |
| ribosomal protein s4 | HMPREF1862_00085 | Not Available | Negative | 72486 - 73109 | 23948.2 |
| putative replication-associated recombination protein a | HMPREF1862_00086 | Not Available | Negative | 73222 - 74574 | 48350.9 |
| sua5/ycio/yrdc/ywlc family protein | HMPREF1862_00087 | Not Available | Negative | 74574 - 75197 | 22642.8 |
| amp-binding enzyme | HMPREF1862_00089 | Not Available | Negative | 75714 - 77531 | 66413.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
