Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Gp51 | F126LOC_RS12670 | Not Available | Negative | 2877104 - 2877433 | 11957.1 |
| tolc family outer membrane protein | F126LOC_RS12675 | Not Available | Negative | 2877673 - 2879040 | 50876.8 |
| hlyd family type i secretion periplasmic adaptor subunit | F126LOC_RS12680 | Not Available | Negative | 2879043 - 2880371 | 48917.0 |
| Abc transporter | F126LOC_RS12685 | Not Available | Negative | 2880399 - 2882126 | 62564.8 |
| Attl | Not Available | Not Available | Positive | 2939972 - 2939985 | Not Available |
| Diguanylate cyclase | F126LOC_RS13005 | Not Available | Positive | 2951127 - 2952602 | 56633.6 |
| yqae/pmp3 family membrane protein | F126LOC_RS13010 | Not Available | Negative | 2952685 - 2952852 | 5979.69 |
| Hypothetical protein | F126LOC_RS13015 | Not Available | Positive | 2953007 - 2953393 | 14409.3 |
| Trna-other; | Not Available | Not Available | Positive | 2953454 - 2953541 | Not Available |
| dgsa anti-repressor mtfa | F126LOC_RS13025 | Not Available | Positive | 2953634 - 2954431 | 30379.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
