Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tail fiber protein | F126LOC_RS22355 | Not Available | Negative | 2862185 - 2863981 | 64345.4 |
| Gp25, tail fiber | F126LOC_RS12575 | Not Available | Negative | 2863984 - 2864565 | 21594.5 |
| Baseplate protein | F126LOC_RS12580 | Not Available | Negative | 2864558 - 2865661 | 39302.6 |
| Putative baseplate assembly protein with lysozyme | F126LOC_RS12585 | Not Available | Negative | 2865652 - 2865999 | 12991.6 |
| Phage baseplate assembly protein | F126LOC_RS12590 | Not Available | Negative | 2866058 - 2866639 | 20425.9 |
| Tail protein | F126LOC_RS12595 | Not Available | Negative | 2866636 - 2867796 | 41932.9 |
| Gp20, phage tail protein x | F126LOC_RS12600 | Not Available | Negative | 2867784 - 2867996 | 7860.5 |
| Tail terminator | F126LOC_RS12605 | Not Available | Negative | 2867986 - 2868915 | 33444.4 |
| Tail tape measure protein | F126LOC_RS12610 | Not Available | Negative | 2868915 - 2871245 | 83872.8 |
| gpe family phage tail protein | F126LOC_RS12615 | Not Available | Negative | 2871468 - 2871611 | 5707.54 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
