Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr04211 family sh3 domain-containing protein | F126LOC_RS04070 | Not Available | Negative | 910827 - 911447 | 23225.9 |
| inorganic triphosphatase | F126LOC_RS04075 | Not Available | Positive | 911769 - 913106 | 50488.0 |
| bifunctional | F126LOC_RS04080 | Not Available | Positive | 913159 - 916014 | 107925.0 |
| bifunctional d-glycero-beta-d-manno-heptose-7-phosphate kinase/d-glycero-beta-d-manno-heptose 1-phosphate adenylyltransferase hlde | F126LOC_RS04085 | Not Available | Positive | 916135 - 917571 | 50969.6 |
| nad-dependent dna ligase liga | F126LOC_RS04090 | Not Available | Positive | 917708 - 919762 | 74801.8 |
| duf3820 family protein | F126LOC_RS04095 | Not Available | Positive | 919767 - 919988 | 8493.62 |
| flxa-like family protein | F126LOC_RS04100 | Not Available | Negative | 920080 - 920436 | 12718.5 |
| flxa-like family protein | F126LOC_RS04105 | Not Available | Negative | 920760 - 921185 | 14943.8 |
| methyl-accepting chemotaxis protein | F126LOC_RS04110 | Not Available | Negative | 921353 - 922888 | 55995.3 |
| galactarate dehydratase | F126LOC_RS04115 | Not Available | Negative | 923679 - 925253 | 56211.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
