Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| indolepyruvate decarboxylase | F126LOC_RS03970 | Not Available | Negative | 886760 - 888427 | 60214.9 |
| duf2502 domain-containing protein | F126LOC_RS03975 | Not Available | Positive | 888728 - 889150 | 17318.0 |
| flavodoxin family protein | F126LOC_RS03980 | Not Available | Negative | 889222 - 889776 | 19378.7 |
| winged helix-turn-helix transcriptional regulator | F126LOC_RS03985 | Not Available | Positive | 889967 - 890350 | 14549.7 |
| bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | F126LOC_RS03990 | Not Available | Negative | 890409 - 892361 | 71657.5 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | F126LOC_RS03995 | Not Available | Positive | 892566 - 893306 | 27137.1 |
| ytfj family protein | F126LOC_RS04000 | Not Available | Negative | 893326 - 893895 | 20999.5 |
| duf1107 domain-containing protein | F126LOC_RS04005 | Not Available | Positive | 894242 - 894448 | 8074.16 |
| is110 family transposase | F126LOC_RS04010 | Not Available | Positive | 894751 - 895737 | 36132.3 |
| hemolysin family protein | F126LOC_RS04015 | Not Available | Negative | 895859 - 897184 | 49036.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
