Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system pard family antitoxin | F126LOC_RS03820 | Not Available | Negative | 859607 - 859870 | 10255.2 |
| radical sam family heme chaperone hemw | F126LOC_RS03825 | Not Available | Negative | 860096 - 861238 | 42680.5 |
| xtp/ditp diphosphatase | F126LOC_RS03830 | Not Available | Negative | 861231 - 861824 | 20936.9 |
| duf167 family protein yggu | F126LOC_RS03835 | Not Available | Negative | 861842 - 862132 | 10607.0 |
| yggt family protein | F126LOC_RS03840 | Not Available | Negative | 862129 - 862683 | 20836.9 |
| pyrroline-5-carboxylate reductase | F126LOC_RS03845 | Not Available | Negative | 862732 - 863553 | 28767.8 |
| yggs family pyridoxal phosphate-dependent enzyme | F126LOC_RS03850 | Not Available | Negative | 863648 - 864361 | 26127.4 |
| type iv pilus twitching motility protein pilt | F126LOC_RS03855 | Not Available | Positive | 864382 - 865398 | 36614.0 |
| diguanylate cyclase | F126LOC_RS03860 | Not Available | Negative | 865367 - 867199 | 69616.2 |
| methyl-accepting chemotaxis protein | F126LOC_RS03865 | Not Available | Negative | 867726 - 869297 | 57387.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
